Daniel Shiwarski

Shiwarski, D.J., Hudson, A.R., Tashman, J.W., Bakirci, E., Moss, S., Coffin, B.D., & Feinberg, A.W. (2024). 3D Bioprinting of Collagen-based Microfluidics for Engineering Fully-biologic Tissue Systems. bioRxiv.Cold Spring Harbor Laboratory. doi: 10.1101/2024.01.26.577422.

Lee, I., Surendran, A., Fleury, S., Gimino, I., Curtiss, A., Fell, C., Shiwarski, D.J., Refy, O., Rothrock, B., Jo, S., Schwartzkopff, T., Mehta, A.S., Wang, Y., Sipe, A., John, S., Ji, X., Nikiforidis, G., Feinberg, A.W., Hester, J., Weber, D.J., Veiseh, O., Rivnay, J., & Cohen-Karni, T. (2023). Electrocatalytic on-site oxygenation for transplanted cell-based-therapies. Nat Commun, 14(1), 7019.Springer Science and Business Media LLC. doi: 10.1038/s41467-023-42697-2.

Stang, M., Tashman, J., Shiwarski, D., Yang, H., Yao, L., & Feinberg, A. (2023). Embedded 3D Printing of Thermally-Cured Thermoset Elastomers and the Interdependence of Rheology and Machine Pathing. ADVANCED MATERIALS TECHNOLOGIES, 8(3).Wiley. doi: 10.1002/admt.202200984.

Tashman, J.W., Shiwarski, D.J., Coffin, B., Ruesch, A., Lanni, F., Kainerstorfer, J.M., & Feinberg, A.W. (2023). In situ volumetric imaging and analysis of FRESH 3D bioprinted constructs using optical coherence tomography. BIOFABRICATION, 15(1), 014102.IOP Publishing. doi: 10.1088/1758-5090/ac975e.

Behre, A., Tashman, J.W., Dikyol, C., Shiwarski, D.J., Crum, R.J., Johnson, S.A., Kommeri, R., Hussey, G.S., Badylak, S.F., & Feinberg, A.W. (2022). 3D Bioprinted Patient-Specific Extracellular Matrix Scaffolds for Soft Tissue Defects. ADVANCED HEALTHCARE MATERIALS, 11(24), e2200866.Wiley. doi: 10.1002/adhm.202200866.

Bliley, J., Tashman, J., Stang, M., Coffin, B., Shiwarski, D., Lee, A., Hinton, T., & Feinberg, A. (2022). FRESH 3D bioprinting a contractile heart tube using human stem cell-derived cardiomyocytes. BIOFABRICATION, 14(2), 024106.IOP Publishing. doi: 10.1088/1758-5090/ac58be.

Bliley, J.M., Shiwarski, D.J., & Feinberg, A.W. (2022). 3D-bioprinted human tissue and the path toward clinical translation. SCIENCE TRANSLATIONAL MEDICINE, 14(666), eabo7047.American Association for the Advancement of Science (AAAS). doi: 10.1126/scitranslmed.abo7047.

Boyd-Shiwarski, C.R., Shiwarski, D.J., Griffiths, S.E., Beacham, R.T., Norrell, L., Morrison, D.E., Wang, J., Mann, J., Tennant, W., Anderson, E.N., Franks, J., Calderon, M., Connolly, K.A., Cheema, M.U., Weaver, C.J., Nkashama, L.J., Weckerly, C.C., Querry, K.E., Pandey, U.B., Donnelly, C.J., Sun, D., Rodan, A.R., & Subramanya, A.R. (2022). WNK kinases sense molecular crowding and rescue cell volume via phase separation. CELL, 185(24), 4488-+.Elsevier BV. doi: 10.1016/j.cell.2022.09.042.

Dosunmu-Ogunbi, A., Yuan, S., Shiwarski, D.J., Tashman, J.W., Reynolds, M., Feinberg, A., Novelli, E.M., Shiva, S., & Straub, A.C. (2022). Endothelial superoxide dismutase 2 is decreased in sickle cell disease and regulates fibronectin processing. Function (Oxf), 3(2), zqac005.Oxford University Press (OUP). doi: 10.1093/function/zqac005.

Sun, W., Tashman, J.W., Shiwarski, D.J., Feinberg, A.W., & Webster-Wood, V.A. (2022). Long-Fiber Embedded Hydrogel 3D Printing for Structural Reinforcement. ACS BIOMATERIALS SCIENCE & ENGINEERING, 8(1), 303-313.American Chemical Society (ACS). doi: 10.1021/acsbiomaterials.1c00908.

Tashman, J.W., Shiwarski, D.J., & Feinberg, A.W. (2022). Development of a high-performance open-source 3D bioprinter. SCIENTIFIC REPORTS, 12(1), 22652.Springer Science and Business Media LLC. doi: 10.1038/s41598-022-26809-4.

Bliley, J.M., Vermeer, M.C.S.C., Duffy, R.M., Batalov, I., Kramer, D., Tashman, J.W., Shiwarski, D.J., Lee, A., Teplenin, A.S., Volkers, L., Coffin, B., Hoes, M.F., Kalmykov, A., Palchesko, R.N., Sun, Y., Jongbloed, J.D.H., Bomer, N., de Boer, R.A., Suurmeijer, A.J.H., Pijnappels, D.A., Bolling, M.C., van der Meer, P., & Feinberg, A.W. (2021). Dynamic loading of human engineered heart tissue enhances contractile function and drives a desmosome-linked disease phenotype. SCIENCE TRANSLATIONAL MEDICINE, 13(603).American Association for the Advancement of Science (AAAS). doi: 10.1126/scitranslmed.abd1817.

Hull, S.M., Lindsay, C.D., Brunel, L.G., Shiwarski, D.J., Tashman, J.W., Roth, J.G., Myung, D., Feinberg, A.W., & Heilshorn, S.C. (2021). 3D Bioprinting using UNIversal Orthogonal Network (UNION) Bioinks. ADVANCED FUNCTIONAL MATERIALS, 31(7).Wiley. doi: 10.1002/adfm.202007983.

Shiwarski, D. (2021). Utility of perfusion decellularization to achieve biochemical and mechanically accurate whole animal and organ-specific tissue scaffolds. Physiol Rep, 9(6), e14804.Wiley. doi: 10.14814/phy2.14804.

Shiwarski, D.J., Hudson, A.R., Tashman, J.W., & Feinberg, A.W. (2021). Emergence of FRESH 3D printing as a platform for advanced tissue biofabrication. APL BIOENGINEERING, 5(1), 010904.AIP Publishing. doi: 10.1063/5.0032777.

Tashman, J.W., Shiwarski, D.J., & Feinberg, A.W. (2021). A high performance open-source syringe extruder optimized for extrusion and retraction during FRESH 3D bioprinting. HardwareX, 9, e00170.Elsevier BV. doi: 10.1016/j.ohx.2020.e00170.

Boyd-Shiwarski, C.R., Weaver, C.J., Beacham, R.T., Shiwarski, D.J., Connolly, K.A., Nkashama, L.J., Mutchler, S.M., Griffiths, S.E., Knoell, S.A., Sebastiani, R.S., Ray, E.C., Marciszyn, A.L., & Subramanya, A.R. (2020). Effects of extreme potassium stress on blood pressure and renal tubular sodium transport. AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY, 318(6), F1341-F1356.American Physiological Society. doi: 10.1152/ajprenal.00527.2019.

Cheng, Y.W., Shiwarski, D.J., Ball, R.L., Whitehead, K.A., & Feinberg, A.W. (2020). Engineering Aligned Skeletal Muscle Tissue Using Decellularized Plant-Derived Scaffolds. ACS BIOMATERIALS SCIENCE & ENGINEERING, 6(5), 3046-3054.American Chemical Society (ACS). doi: 10.1021/acsbiomaterials.0c00058.

Mirdamadi, E., Tashman, J.W., Shiwarski, D.J., Palchesko, R.N., & Feinberg, A.W. (2020). FRESH 3D Bioprinting a Full-Size Model of the Human Heart. ACS BIOMATERIALS SCIENCE & ENGINEERING, 6(11), 6453-6459.American Chemical Society (ACS). doi: 10.1021/acsbiomaterials.0c01133.

Shiwarski, D.J., Tashman, J.W., Eaton, A.F., Apodaca, G., & Feinberg, A.W. (2020). 3D printed biaxial stretcher compatible with live fluorescence microscopy. HardwareX, 7, e00095.Elsevier BV. doi: 10.1016/j.ohx.2020.e00095.

Shiwarski, D.J., Tashman, J.W., Tsamis, A., Bliley, J.M., Blundon, M.A., Aranda-Michel, E., Jallerat, Q., Szymanski, J.M., McCartney, B.M., & Feinberg, A.W. (2020). Fibronectin-based nanomechanical biosensors to map 3D surface strains in live cells and tissue. NATURE COMMUNICATIONS, 11(1), 5883.Springer Science and Business Media LLC. doi: 10.1038/s41467-020-19659-z.

Kalmykov, A., Huang, C., Bliley, J., Shiwarski, D., Tashman, J., Abdullah, A., Rastogi, S.K., Shukla, S., Mataev, E., Feinberg, A.W., Hsia, K.J., & Cohen-Karni, T. (2019). Organ-on-e-chip: Three-dimensional self-rolled biosensor array for electrical interrogations of human electrogenic spheroids. SCIENCE ADVANCES, 5(8), eaax0729.American Association for the Advancement of Science (AAAS). doi: 10.1126/sciadv.aax0729.

Lee, A., Hudson, A.R., Shiwarski, D.J., Tashman, J.W., Hinton, T.J., Yerneni, S., Bliley, J.M., Campbell, P.G., & Feinberg, A.W. (2019). 3D bioprinting of collagen to rebuild components of the human heart. SCIENCE, 365(6452), 482-+.American Association for the Advancement of Science (AAAS). doi: 10.1126/science.aav9051.

Shiwarski, D.J., Crilly, S.E., Dates, A., & Puthenveedu, M.A. (2019). Dual RXR motifs regulate nerve growth factor-mediated intracellular retention of the delta opioid receptor. MOLECULAR BIOLOGY OF THE CELL, 30(5), 680-690.American Society for Cell Biology (ASCB). doi: 10.1091/mbc.E18-05-0292.

Boyd-Shiwarski, C.R., Shiwarski, D.J., Roy, A., Namboodiri, H.N., Nkashama, L.J., Xie, J., McClain, K.L., Marciszyn, A., Kleyman, T.R., Tan, R.J., Stolz, D.B., Puthenveedu, M.A., Huang, C.L., & Subramanya, A.R. (2018). Potassium-regulated distal tubule WNK bodies are kidney-specific WNK1 dependent. MOLECULAR BIOLOGY OF THE CELL, 29(4), 499-509.American Society for Cell Biology (ASCB). doi: 10.1091/mbc.E17-08-0529.

Rastogi, S.K., Bliley, J., Shiwarski, D.J., Raghavan, G., Feinberg, A.W., & Cohen-Karni, T. (2018). Graphene Microelectrode Arrays for Electrical and Optical Measurements of Human Stem Cell-Derived Cardiomyocytes. CELLULAR AND MOLECULAR BIOENGINEERING, 11(5), 407-418.Springer Science and Business Media LLC. doi: 10.1007/s12195-018-0525-z.

Godse, N.R., Khan, N., Yochum, Z.A., Gomez-Casal, R., Kemp, C., Shiwarski, D.J., Seethala, R.S., Kulich, S., Seshadri, M., Burns, T.F., & Duvvuri, U. (2017). TMEM16A/ANO1 Inhibits Apoptosis Via Downregulation of Bim Expression. CLINICAL CANCER RESEARCH, 23(23), 7324-7332.American Association for Cancer Research (AACR). doi: 10.1158/1078-0432.CCR-17-1561.

Shiwarski, D.J., Darr, M., Telmer, C.A., Bruchez, M.P., & Puthenveedu, M.A. (2017). PI3K class II α regulates δ-opioid receptor export from the trans-Golgi network. MOLECULAR BIOLOGY OF THE CELL, 28(16), 2202-2219.American Society for Cell Biology (ASCB). doi: 10.1091/mbc.E17-01-0030.

Shiwarski, D.J., Tipton, A., Giraldo, M.D., Schmidt, B.F., Gold, M.S., Pradhan, A.A., & Puthenveedu, M.A. (2017). A PTEN-Regulated Checkpoint Controls Surface Delivery of δ Opioid Receptors. JOURNAL OF NEUROSCIENCE, 37(14), 3741-3752.Society for Neuroscience. doi: 10.1523/JNEUROSCI.2923-16.2017.

Weinberg, Z.Y., Zajac, A.S., Phan, T., Shiwarski, D.J., & Puthenveedu, M.A. (2017). Sequence-Specific Regulation of Endocytic Lifetimes Modulates Arrestin-Mediated Signaling at the μ Opioid Receptor. MOLECULAR PHARMACOLOGY, 91(4), 416-U216.American Society for Pharmacology & Experimental Therapeutics (ASPET). doi: 10.1124/mol.116.106633.

Bowman, S.L., Shiwarski, D.J., & Puthenveedu, M.A. (2016). Distinct G protein-coupled receptor recycling pathways allow spatial control of downstream G protein signaling. JOURNAL OF CELL BIOLOGY, 214(7), 797-806.Rockefeller University Press. doi: 10.1083/jcb.201512068.

Bowman, S.L., Soohoo, A.L., Shiwarski, D.J., Schulz, S., Pradhan, A.A., & Puthenveedu, M.A. (2015). Cell-Autonomous Regulation of Mu-Opioid Receptor Recycling by Substance P. CELL REPORTS, 10(11), 1925-1936.Elsevier BV. doi: 10.1016/j.celrep.2015.02.045.

Shiwarski, D.J., Shao, C., Bill, A., Kim, J., Xiao, D., Bertrand, C.A., Seethala, R.S., Sano, D., Myers, J.N., Ha, P., Grandis, J., Gaither, L.A., Puthenveedu, M.A., & Duvvuri, U. (2014). To "Grow" or "Go": TMEM16A Expression as a Switch between Tumor Growth and Metastasis in SCCHN. CLINICAL CANCER RESEARCH, 20(17), 4673-4688.American Association for Cancer Research (AACR). doi: 10.1158/1078-0432.CCR-14-0363.

Van, P.T., Bass, V., Shiwarski, D., Lanni, F., & Minden, J. (2014). High dynamic range proteome imaging with the structured illumination gel imager. ELECTROPHORESIS, 35(18), 2642-2655.Wiley. doi: 10.1002/elps.201400126.

Chenevert, J., Duvvuri, U., Chiosea, S., Dacic, S., Cieply, K., Kim, J., Shiwarski, D., & Seethala, R.R. (2012). DOG1: a novel marker of salivary acinar and intercalated duct differentiation. MODERN PATHOLOGY, 25(7), 919-929.Elsevier BV. doi: 10.1038/modpathol.2012.57.

Duvvuri, U., Shiwarski, D.J., Xiao, D., Bertrand, C., Huang, X., Edinger, R.S., Rock, J.R., Harfe, B.D., Henson, B.J., Kunzelmann, K., Schreiber, R., Seethala, R.S., Egloff, A.M., Chen, X., Lui, V.W., Grandis, J.R., & Gollin, S.M. (2012). TMEM16A Induces MAPK and Contributes Directly to Tumorigenesis and Cancer Progression. CANCER RESEARCH, 72(13), 3270-3281.American Association for Cancer Research (AACR). doi: 10.1158/0008-5472.CAN-12-0475-T.

Boyd-Shiwarski, C.R., Beacham, R.T., Griffiths, S.E., Shiwarski, D.J., Knoell, S.A., Nkashama, L.J., Querry, K., Marciszyn, A.L., Huang, C.L., Stocker, S.D., & Subramanya, A.R. Kidney-Specific WNK1 Amplifies NCC Responsiveness to Potassium Imbalance. Cold Spring Harbor Laboratory. doi: 10.1101/2021.03.12.435046.

Boyd-Shiwarski, C.R., Shiwarski, D.J., Griffiths, S.E., Beacham, R.T., Norrell, L., Morrison, D.E., Wang, J., Mann, J., Tennant, W., Anderson, E.N., Franks, J., Calderon, M., Connolly, K.A., Weaver, C.J., Weckerly, C.C., Pandey, U.B., Donnelly, C.J., Sun, D., Rodan, A.R., & Subramanya, A.R. WNK kinases sense molecular crowding and rescue cell volume via phase separation. Cold Spring Harbor Laboratory. doi: 10.1101/2022.01.10.475707.

Lee, I., Surendran, A., Fleury, S., Gimino, I., Curtis, A., Fell, C., Shiwarski, D., El-Refy, O., Rothrock, B., Jo, S., Schwartzkopff, T., Mehta, A., John, S., Ji, X., Nikiforidis, G., Feinberg, A., Hester, J., Weber, D., Veiseh, O., Rivnay, J., & Cohen-Karni, T. Electrocatalytic on-site oxygenation for transplanted cell-based-therapies. Research Square Platform LLC. doi: 10.21203/rs.3.rs-3026789/v1.

Palchesko, R.N., Du, Y., Geary, M.L., Carrasquilla, S., Shiwarski, D.J., Khandaker, I., Funderburgh, J.L., & Feinberg, A.W. In vivo engraftment into the cornea endothelium using extracellular matrix shrink-wrapped cells. Communications Materials, 3(1).Springer Science and Business Media LLC. doi: 10.1038/s43246-022-00247-1.

Shiwarski, D.J., Tashman, J.W., Tsamis, A., Bliley, J.M., Blundon, M.A., Aranda-Michel, E., Jallerat, Q., Szymanski, J.M., McCartney, B.M., & Feinberg, A.W. Fibronectin-Based Nanomechanical Biosensors to Map 3D Strains in Live Cells and Tissues. Cold Spring Harbor Laboratory. doi: 10.1101/2020.02.11.943696.

Shiwarski, D.J., Tashman, J.W., Tsamis, A., Bliley, J.M., Blundon, M.A., Aranda-Michel, E., Jallerat, Q., Szymanski, J.M., McCartney, B.M., & Feinberg, A.W. Fabrication of Nanomechanical Biosensors to Map 3D Surface Strain in Live Cells and Tissue. Research Square Platform LLC. doi: 10.21203/rs.3.pex-1169/v1.

Tashman, J.W., Shiwarski, D.J., & Feinberg, A.W. Development of a High-Performance Open-Source 3D Bioprinter. Cold Spring Harbor Laboratory. doi: 10.1101/2022.09.11.507416.

Tashman, J.W., Shiwarski, D.J., Ruesch, A., Lanni, F., Kainerstorfer, J.M., & Feinberg, A.W. In Situ Volumetric Imaging and Analysis of FRESH 3D Bioprinted Constructs Using Optical Coherence Tomography. Cold Spring Harbor Laboratory. doi: 10.1101/2021.06.30.450389.