Yang Liu

Cang, H., Liu, Y., & Xing, J. (2024). Mosaic-PICASSO: accurate crosstalk removal for multiplex fluorescence imaging. In Peng, H. (Ed.). BIOINFORMATICS, 40(1), btad784.Oxford University Press (OUP). doi: 10.1093/bioinformatics/btad784.

Liu, Y., & Uttam, S. (2024). Perspective on quantitative phase imaging to improve precision cancer medicine. Journal of Biomedical Optics, 29(Suppl 2), s22705.SPIE, the international society for optics and photonics. doi: 10.1117/1.jbo.29.s2.s22705.

Ma, H., Chen, M., Nguyen, P., & Liu, Y. (2024). Toward drift-free high-throughput nanoscopy through adaptive intersection maximization. SCIENCE ADVANCES, 10(21), eadm7765.American Association for the Advancement of Science (AAAS). doi: 10.1126/sciadv.adm7765.

Ma, H., Chen, M., Xu, J., Yang, Y., Zhao, Y., & Liu, Y. (2024). An Omni-Mesoscope for multiscale high-throughput quantitative phase imaging of cellular dynamics and high-content molecular characterization. Science Advances, 10(42), eadq5009.American Association for the Advancement of Science (AAAS). doi: 10.1126/sciadv.adq5009.

Xu, J., Sun, X., Chen, Z., Ma, H., & Liu, Y. (2024). Super-resolution imaging of T lymphocyte activation reveals chromatin decondensation and disrupted nuclear envelope. COMMUNICATIONS BIOLOGY, 7(1), 717.Springer Nature. doi: 10.1038/s42003-024-06393-1.

Ma, F., Akolkar, H., Xu, J., Liu, Y., Popova, D., Xie, J., Youssef, M.M., Benosman, R., Hart, R.P., & Herrup, K. (2023). The Amyloid Precursor Protein Modulates the Position and Length of the Axon Initial Segment. JOURNAL OF NEUROSCIENCE, 43(10), 1830-1844.Society for Neuroscience. doi: 10.1523/JNEUROSCI.0172-22.2023.

Han, L., Mich-Basso, J.D., Li, Y., Ammanamanchi, N., Xu, J., Bargaje, A.P., Liu, H., Wu, L., Jeong, J.H., Franks, J., Stolz, D.B., Wu, Y.L., Rajasundaram, D., Liu, Y., & Kuhn, B. (2022). Changes in nuclear pore numbers control nuclear import and stress response of mouse hearts. DEVELOPMENTAL CELL, 57(20), 2397-+.Elsevier. doi: 10.1016/j.devcel.2022.09.017.

Ma, F., Xu, J., Liu, Y., Popova, D., Youssef, M.M., Hart, R.P., & Herrup, K. (2022). The amyloid precursor protein modulates the position and length of the axon initial segment offering a new perspective on Alzheimer’s disease genetics. 2022.01.23.477413.Cold Spring Harbor Laboratory. doi: 10.1101/2022.01.23.477413.

Skoko, J.J., Cao, J., Gaboriau, D., Attar, M., Asan, A., Hong, L., Paulsen, C.E., Ma, H., Liu, Y., Wu, H., Harkness, T., Furdui, C.M., Manevich, Y., Morrison, C.G., Brown, E.T., Normolle, D., Spies, M., Spies, M.A., Carroll, K., & Neumann, C.A. (2022). Redox regulation of RAD51 Cys319 and homologous recombination by peroxiredoxin 1. REDOX BIOLOGY, 56, 102443.Elsevier. doi: 10.1016/j.redox.2022.102443.

Thota, P.N., Nasibli, J., Kumar, P., Sanaka, M.R., Chak, A., Zhang, X., Liu, X., Uttam, S., & Liu, Y. (2022). Prediction of neoplastic progression in Barrett's esophagus using nanoscale nuclear architecture mapping: a pilot study. GASTROINTESTINAL ENDOSCOPY, 95(6), 1239-1246.Elsevier. doi: 10.1016/j.gie.2022.01.007.

Xu, J., Sun, X., Kim, K., Brand, R.M., Hartman, D., Ma, H., Brand, R.E., Bai, M., & Liu, Y. (2022). Ultrastructural visualization of chromatin in cancer pathogenesis using a simple small-molecule fluorescent probe. SCIENCE ADVANCES, 8(9), eabm8293.American Association for the Advancement of Science (AAAS). doi: 10.1126/sciadv.abm8293.

Ma, H., & Liu, Y. (2021). Robust emitter localization with enhanced harmonic analysis. OPTICS LETTERS, 46(23), 5798-5801.Optica Publishing Group. doi: 10.1364/OL.437409.

Ma, H., & Liu, Y. (2021). Embedded nanometer position tracking based on enhanced phasor analysis (vol 46, pg 3825, 2021). OPTICS LETTERS, 46(18), 4639.Optica Publishing Group. doi: 10.1364/OL.440217.

Ma, H., & Liu, Y. (2021). Embedded nanometer position tracking based on enhanced phasor analysis. OPTICS LETTERS, 46(16), 3825-3828.Optica Publishing Group. doi: 10.1364/OL.433740.

Ma, H., & Liu, Y. (2021). Super-Resolution Imaging through Single-Molecule Localization. In Biomedical Optical Imaging. (p. 4-1-4-26).AIP Publishing. doi: 10.1063/9780735423794_004.

Ma, H., Jiang, W., Xu, J., & Liu, Y. (2021). Enhanced super-resolution microscopy by extreme value based emitter recovery. SCIENTIFIC REPORTS, 11(1), 20417.Springer Nature. doi: 10.1038/s41598-021-00066-3.

Mela, C.A., & Liu, Y. (2021). Application of convolutional neural networks towards nuclei segmentation in localization-based super-resolution fluorescence microscopy images. BMC BIOINFORMATICS, 22(1), 325.Springer Nature. doi: 10.1186/s12859-021-04245-x.

Xiang, Y., Sang, Z., Bitton, L., Xu, J., Liu, Y., Schneidman-Duhovny, D., & Shi, Y. (2021). Integrative proteomics identifies thousands of distinct, multi-epitope, and high-affinity nanobodies. CELL SYSTEMS, 12(3), 220-+.Elsevier. doi: 10.1016/j.cels.2021.01.003.

Xu, J., & Liu, Y. (2021). Probing Chromatin Compaction and Its Epigenetic States in situ With Single-Molecule Localization-Based Super-Resolution Microscopy. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 9, 653077.Frontiers. doi: 10.3389/fcell.2021.653077.

Ma, H., & Liu, Y. (2020). Super-resolution localization microscopy: Toward high throughput, high quality, and low cost. APL PHOTONICS, 5(6), 060902.AIP Publishing. doi: 10.1063/5.0011731.

Ma, H., Wang, P., Shang, D., & Liu, Y. (2020). Spatial-domain low-coherence quantitative phase microscopy to improve the cytological diagnosis of pancreatic cancer. JOURNAL OF INVESTIGATIVE MEDICINE, 68(1), 60-67.SAGE Publications. doi: 10.1136/jim-2019-000997.

Troy, K., Liu, Y., & Hainer, S.J. (2020). PathSTORM: a road to early cancer detection. MOLECULAR & CELLULAR ONCOLOGY, 7(5), 1776086.Taylor & Francis. doi: 10.1080/23723556.2020.1776086.

Xu, J., Ma, H., & Liu, Y. (2020). Optimized Stochastic Optical Reconstruction Microscopy for Imaging Chromatin Structure in Pathological Tissue. Current Protocols in Cytometry, 94(1), e78.Wiley. doi: 10.1002/cpcy.78.

Xu, J., Ma, H., Ma, H., Jiang, W., Mela, C.A., Duan, M., Zhao, S., Gao, C., Hahm, E.R., Lardo, S.M., Troy, K., Sun, M., Pai, R., Stolz, D.B., Zhang, L., Singh, S., Brand, R.E., Hartman, D.J., Hu, J., Hainer, S.J., & Liu, Y. (2020). Super-resolution imaging reveals the evolution of higher-order chromatin folding in early carcinogenesis. NATURE COMMUNICATIONS, 11(1), 1899.Springer Nature. doi: 10.1038/s41467-020-15718-7.

Liu, Y., & Xu, J. (2019). High-Resolution Microscopy for Imaging Cancer Pathobiology. Current Pathobiology Reports, 7(3), 85-96.Springer Nature. doi: 10.1007/s40139-019-00201-w.

Ma, H., Xu, J., & Liu, Y. (2019). WindSTORM: Robust online image processing for high-throughput nanoscopy. SCIENCE ADVANCES, 5(4), eaaw0683.American Association for the Advancement of Science (AAAS). doi: 10.1126/sciadv.aaw0683.

Nmezi, B., Xu, J., Fu, R., Armiger, T.J., Rodriguez-Bey, G., Powell, J.S., Ma, H., Sullivan, M., Tu, Y., Chen, N.Y., Young, S.G., Stolz, D.B., Dahl, K.N., Liu, Y., & Padiath, Q.S. (2019). Concentric organization of A- and B-type lamins predicts their distinct roles in the spatial organization and stability of the nuclear lamina. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116(10), 4307-4315.Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.1810070116.

Uttam, S., Hashash, J.G., LaFace, J., Binion, D., Regueiro, M., Hartmann, D.J., Brand, R.E., & Li, Y. (2019). Three-Dimensional Nanoscale Nuclear Architecture Mapping of Rectal Biopsies Detects Colorectal Neoplasia in Patients with Inflammatory Bowel Disease. CANCER PREVENTION RESEARCH, 12(8), 527-538.American Association for Cancer Research (AACR). doi: 10.1158/1940-6207.CAPR-19-0024.

Xu, J., & Liu, Y. (2019). A guide to visualizing the spatial epigenome with super-resolution microscopy. FEBS JOURNAL, 286(16), 3095-3109.Wiley. doi: 10.1111/febs.14938.

Xu, J., & Liu, Y. (2019). Imaging Higher-order Chromatin Structures in Single Cells Using Stochastic Optical Reconstruction Microscopy. Bio-protocol, 9(3), e3160.Bio-Protocol. doi: 10.21769/bioprotoc.3160.

Gao, Y., Tan, J., Jin, J., Ma, H., Chen, X., Leger, B., Xu, J., Spagnol, S.T., Dahl, K.N., Levine, A.S., Liu, Y., & Lan, L. (2018). SIRT6 facilitates directional telomere movement upon oxidative damage. SCIENTIFIC REPORTS, 8(1), 5407.Springer Nature. doi: 10.1038/s41598-018-23602-0.

Teng, Y., Yadav, T., Duan, M., Tan, J., Xiang, Y., Gao, B., Xu, J., Liang, Z., Liu, Y., Nakajima, S., Shi, Y., Levine, A.S., Zou, L., & Lan, L. (2018). ROS-induced R loops trigger a transcription-coupled but BRCA1/2-independent homologous recombination pathway through CSB. NATURE COMMUNICATIONS, 9(1), 4115.Springer Nature. doi: 10.1038/s41467-018-06586-3.

Uttam, S., & Liu, Y. (2018). Fourier phase based depth-resolved nanoscale nuclear architecture mapping for cancer detection. METHODS, 136, 134-151.Elsevier. doi: 10.1016/j.ymeth.2017.10.011.

Xu, J., Ma, H., Jin, J., Uttam, S., Fu, R., Huang, Y., & Liu, Y. (2018). Super-Resolution Imaging of Higher-Order Chromatin Structures at Different Epigenomic States in Single Mammalian Cells. CELL REPORTS, 24(4), 873-882.Elsevier. doi: 10.1016/j.celrep.2018.06.085.

Gao, Y., Li, C., Wei, L., Teng, Y., Nakajima, S., Chen, X., Xu, J., Legar, B., Ma, H., Spagnol, S.T., Wan, Y., Dahl, K.N., Liu, Y., Levine, A.S., & Lan, L. (2017). SSRP1 Cooperates with PARP and XRCC1 to Facilitate Single-Strand DNA Break Repair by Chromatin Priming. CANCER RESEARCH, 77(10), 2674-2685.American Association for Cancer Research (AACR). doi: 10.1158/0008-5472.CAN-16-3128.

Ma, H., Fu, R., Xu, J., & Liu, Y. (2017). A simple and cost-effective setup for super-resolution localization microscopy. SCIENTIFIC REPORTS, 7(1), 1542.Springer Nature. doi: 10.1038/s41598-017-01606-6.

Ma, H., Xu, J., Jin, J., Huang, Y., & Liu, Y. (2017). A Simple Marker-Assisted 3D Nanometer Drift Correction Method for Superresolution Microscopy. BIOPHYSICAL JOURNAL, 112(10), 2196-2208.Elsevier. doi: 10.1016/j.bpj.2017.04.025.

Xu, J., Ma, H., & Liu, Y. (2017). Stochastic Optical Reconstruction Microscopy (STORM). Current Protocols in Cytometry, 81(1), 12.46.1-12.46.27.Wiley. doi: 10.1002/cpcy.23.

Pham, H.V., Pantanowitz, L., & Liu, Y. (2016). Quantitative phase imaging to improve the diagnostic accuracy of urine cytology. CANCER CYTOPATHOLOGY, 124(9), 641-650.Wiley. doi: 10.1002/cncy.21734.

Del Portillo, A., Lagana, S.M., Yao, Y., Uehara, T., Jhala, N., Ganguly, T., Nagy, P., Gutierrez, J., Luna, A., Abrams, J., Liu, Y., Brand, R., Sepulveda, J.L., Falk, G.W., & Sepulveda, A.R. (2015). Evaluation of Mutational Testing of Preneoplastic Barrett's Mucosa by Next-Generation Sequencing of Formalin-Fixed, Paraffin-Embedded Endoscopic Samples for Detection of Concurrent Dysplasia and Adenocarcinoma in Barrett's Esophagus. JOURNAL OF MOLECULAR DIAGNOSTICS, 17(4), 412-419.Elsevier. doi: 10.1016/j.jmoldx.2015.02.006.

Glassford, W.J., Johnson, W.C., Dall, N.R., Smith, S.J., Liu, Y., Boll, W., Noll, M., & Rebeiz, M. (2015). Co-option of an Ancestral Hox-Regulated Network Underlies a Recently Evolved Morphological Novelty. DEVELOPMENTAL CELL, 34(5), 520-531.Elsevier. doi: 10.1016/j.devcel.2015.08.005.

Ma, H., Xu, J., Jin, J., Gao, Y., Lan, L., & Liu, Y. (2015). Fast and Precise 3D Fluorophore Localization based on Gradient Fitting. SCIENTIFIC REPORTS, 5(1), 14335.Springer Nature. doi: 10.1038/srep14335.

Sun, L., Tan, R., Xu, J., LaFace, J., Gao, Y., Xiao, Y., Attar, M., Neumann, C., Li, G.M., Su, B., Liu, Y., Nakajima, S., Levine, A.S., & Lan, L. (2015). Targeted DNA damage at individual telomeres disrupts their integrity and triggers cell death. NUCLEIC ACIDS RESEARCH, 43(13), 6334-6347.Oxford University Press (OUP). doi: 10.1093/nar/gkv598.

Uttam, S., & Liu, Y. (2015). Fourier phase in Fourier-domain optical coherence tomography. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION, 32(12), 2286-2306.Optica Publishing Group. doi: 10.1364/JOSAA.32.002286.

Uttam, S., Pham, H.V., LaFace, J., Leibowitz, B., Yu, J., Brand, R.E., Hartman, D.J., & Liu, Y. (2015). Early Prediction of Cancer Progression by Depth-Resolved Nanoscale Mapping of Nuclear Architecture from Unstained Tissue Specimens. CANCER RESEARCH, 75(22), 4718-4727.American Association for Cancer Research (AACR). doi: 10.1158/0008-5472.CAN-15-1274.

Hartman, D.J.J., Krasinskas, A.M.M., Uttam, S., Staton, K., Bista, R., Rizvi, S., Slivka, A., Brand, R., & Liu, Y. (2014). Assessment of Nuclear Nanomorphology Marker to Improve the Detection of Malignancy From Bile Duct Biopsy Specimens. AMERICAN JOURNAL OF CLINICAL PATHOLOGY, 141(6), 884-891.Oxford University Press (OUP). doi: 10.1309/AJCPXQD0NSJNK0CX.

Liu, Y., Uttam, S., Alexandrov, S., & Bista, R.K. (2014). Investigation of nanoscale structural alterations of cell nucleus as an early sign of cancer. BMC BIOPHYSICS, 7(1), 1.Springer Nature. doi: 10.1186/2046-1682-7-1.

Fasanella, K.E., Bista, R.K., Staton, K., Rizvi, S., Uttam, S., Zhao, C., Sepulveda, A., Brand, R.E., McGrath, K., & Liu, Y. (2013). Nuclear Nano-architecture Markers of Gastric Cardia and Upper Squamous Esophagus Detect Esophageal Cancer "Field Effect". JOURNAL OF CANCER, 4(8), 626-634.Ivyspring International Publisher. doi: 10.7150/jca.6990.

Uttam, S., Alexandrov, S.A., Bista, R.K., & Liu, Y. (2013). Tomographic imaging via spectral encoding of spatial frequency. OPTICS EXPRESS, 21(6), 7488-7504.Optica Publishing Group. doi: 10.1364/OE.21.007488.

Uttam, S., Bista, R.K., Staton, K., Alexandrov, S., Choi, S., Bakkenist, C.J., Hartman, D.J., Brand, R.E., & Liu, Y. (2013). Investigation of depth-resolved nanoscale structural changes in regulated cell proliferation and chromatin decondensation: erratum (vol 4, pg 596, 2013). BIOMEDICAL OPTICS EXPRESS, 4(11), 2491.Optica Publishing Group. doi: 10.1364/BOE.4.002491.

Uttam, S., Bista, R.K., Staton, K., Alexandrov, S., Choi, S., Bakkenist, C.J., Hartman, D.J., Brand, R.E., & Liu, Y. (2013). Investigation of depth-resolved nanoscale structural changes in regulated cell proliferation and chromatin decondensation. BIOMEDICAL OPTICS EXPRESS, 4(4), 596-613.Optica Publishing Group. doi: 10.1364/BOE.4.000596.

Wu, D., He, D., Qiu, J., Lin, R., & Liu, Y. (2013). Comparing social tags with subject headings on annotating books: A study comparing the information science domain in English and Chinese. JOURNAL OF INFORMATION SCIENCE, 39(2), 169-187.SAGE Publications. doi: 10.1177/0165551512451808.

Alexandrov, S.A., Uttam, S., Bista, R.K., Staton, K., & Liu, Y. (2012). Spectral encoding of spatial frequency approach for characterization of nanoscale structures. APPLIED PHYSICS LETTERS, 101(3), 033702.AIP Publishing. doi: 10.1063/1.4737209.

Alexandrov, S.A., Uttam, S., Bista, R.K., Zhao, C., & Liu, Y. (2012). Real-time quantitative visualization of 3D structural information. OPTICS EXPRESS, 20(8), 9203-9214.Optica Publishing Group. doi: 10.1364/OE.20.009203.

Bista, R.K., Uttam, S., Hartman, D.J., Qiu, W., Yu, J., Zhang, L., Brand, R.E., & Liu, Y. (2012). Investigation of nuclear nano-morphology marker as a biomarker for cancer risk assessment using a mouse model. JOURNAL OF BIOMEDICAL OPTICS, 17(6), 0660141-0660147.SPIE, the international society for optics and photonics. doi: 10.1117/1.JBO.17.6.066014.

Bista, R.K., Wang, P., Bhargava, R., Uttam, S., Hartman, D.J., Brand, R.E., & Liu, Y. (2012). Nuclear nano-morphology markers of histologically normal cells detect the "field effect" of breast cancer. BREAST CANCER RESEARCH AND TREATMENT, 135(1), 115-124.Springer Nature. doi: 10.1007/s10549-012-2125-2.

Chen, Y., Liang, C.P., Liu, Y., Fischer, A.H., Parwani, A.V., & Pantanowitz, L. (2012). Review of advanced imaging techniques. Journal of Pathology Informatics, 3(1), 22.Elsevier. doi: 10.4103/2153-3539.96751.

Alexandrov, S.A., Uttam, S., Bista, R.K., & Liu, Y. (2011). Spectral contrast imaging microscopy. OPTICS LETTERS, 36(17), 3323-3325.Optica Publishing Group. doi: 10.1364/OL.36.003323.

Bista, R.K., Brentnall, T.A., Bronner, M.P., Langmead, C.J., Brand, R.E., & Liu, Y. (2011). Using Optical Markers of Nondysplastic Rectal Epithelial Cells to Identify Patients with Ulcerative Colitis-associated Neoplasia. INFLAMMATORY BOWEL DISEASES, 17(12), 2427-2435.Oxford University Press (OUP). doi: 10.1002/ibd.21639.

Bista, R.K., Uttam, S., Wang, P., Staton, K., Choi, S., Bakkenist, C.J., Hartman, D.J., Brand, R.E., & Liu, Y. (2011). Quantification of nanoscale nuclear refractive index changes during the cell cycle. JOURNAL OF BIOMEDICAL OPTICS, 16(7), 070503-070503-3.SPIE, the international society for optics and photonics. doi: 10.1117/1.3597723.

Fang, C., Brokl, D., Brand, R.E., & Liu, Y. (2011). Depth-selective fiber-optic probe for characterization of superficial tissue at a constant physical depth. BIOMEDICAL OPTICS EXPRESS, 2(4), 838-849.Optica Publishing Group. doi: 10.1364/BOE.2.000838.

Rizvi, S., Davison, J.M., Bista, R.K., Wang, P., Holinga, J., Staton, K.D., Hartman, D.I., Brand, R., Fasanella, K.E., Liu, Y., & McGrath, K. (2011). Nuclear Refractive Index Properties of Non-Dysplastic Metaplastic Cells to Detect the Presence of Esophageal High-Grade Dysplasia and Adenocarcinoma From Barrett's Esophagus. GASTROENTEROLOGY, 140, (p. S217).

Uttam, S., Bista, R.K., Hartman, D.J., Brand, R.E., & Liu, Y. (2011). Correction of stain variations in nuclear refractive index of clinical histology specimens. JOURNAL OF BIOMEDICAL OPTICS, 16(11), 116013-1160137.SPIE, the international society for optics and photonics. doi: 10.1117/1.3650306.

Mahmoud, B.H., Ruvolo, E., Hexsel, C.L., Liu, Y., Owen, M.R., Kollias, N., Lim, H.W., & Hamzavi, I.H. (2010). Impact of Long-Wavelength UVA and Visible Light on Melanocompetent Skin. JOURNAL OF INVESTIGATIVE DERMATOLOGY, 130(8), 2092-2097.Elsevier. doi: 10.1038/jid.2010.95.

Wang, P., Bista, R., Bhargava, R., Brand, R.E., & Liu, Y. (2010). Spatial-domain low-coherence quantitative phase microscopy for cancer diagnosis. OPTICS LETTERS, 35(17), 2840-2842.Optica Publishing Group. doi: 10.1364/ol.35.002840.

Wang, P., Bista, R.K., Khalbuss, W.E., Qiu, W., Uttam, S., Staton, K., Zhang, L., Brentnall, T.A., Brand, R.E., & Liu, Y. (2010). Nanoscale nuclear architecture for cancer diagnosis beyond pathology via spatial-domain low-coherence quantitative phase microscopy. JOURNAL OF BIOMEDICAL OPTICS, 15(6), 066028-066028-8.SPIE, the international society for optics and photonics. doi: 10.1117/1.3523618.

Wang, P., Bista, R.K., Qiu, W., Khalbuss, W.E., Zhang, L., Brand, R.E., & Liu, Y. (2010). An insight into statistical refractive index properties of cell internal structure via low-coherence statistical amplitude microscopy. OPTICS EXPRESS, 18(21), 21950-21958.Optica Publishing Group. doi: 10.1364/OE.18.021950.

Backman, V., Subramanian, H., Pradhan, P., Liu, Y., Capoglu, I., Rogers, J.D., Roy, H.K., & Taflove, A. (2009). Detecting Alterations in Cell Ultrastructure with Optical Imaging. Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 1, 6325-6326.Institute of Electrical and Electronics Engineers (IEEE). doi: 10.1109/iembs.2009.5333173.

Subramanian, H., Pradhan, P., Liu, Y., Capoglu, I.R., Rogers, J.D., Roy, H.K., Brand, R.E., & Backman, V. (2009). Partial-wave microscopic spectroscopy detects subwavelength refractive index fluctuations: an application to cancer diagnosis. OPTICS LETTERS, 34(4), 518-520.Optica Publishing Group. doi: 10.1364/OL.34.000518.

Roy, H.K., Turzhitsky, V., Kim, Y.L., Goldberg, M.J., Muldoon, J.P., Liu, Y., Brand, R.E., Hall, C., Hasabou, N., Jameel, M., & Backman, V. (2008). Spectral slope from the endoscopically-normal mucosa predicts concurrent colonic neoplasia:: A pilot Ex-Vivo clinical study. DISEASES OF THE COLON & RECTUM, 51(9), 1381-1386.Wolters Kluwer. doi: 10.1007/s10350-008-9384-3.

Subramanian, H., Pradhan, P., Liu, Y., Capoglu, I.R., Li, X., Rogers, J.D., Heifetz, A., Kunte, D., Roy, H.K., Taflove, A., & Backman, V. (2008). Optical methodology for detecting histologically unapparent nanoscale consequences of genetic alterations in biological cells. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(51), 20118-20123.Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.0804723105.

Turzhitsky, V., Liu, Y., Hasabou, N., Goldberg, M., Roy, H.K., Backman, V., & Brand, R. (2008). Investigating population risk factors of pancreatic cancer by evaluation of optical markers in the duodenal mucosa. DISEASE MARKERS, 25(6), 313-321.Wiley. doi: 10.1155/2008/958214.

Turzhitsky, V.M., Gomes, A.J., Kim, Y.L., Liu, Y., Kromine, A., Rogers, J.D., Jameel, M., Roy, H.K., & Backman, V. (2008). Measuring mucosal blood supply in vivo with a polarization-gating probe. APPLIED OPTICS, 47(32), 6046-6057.Optica Publishing Group. doi: 10.1364/AO.47.006046.

Allen, J., Liu, Y., Kim, Y.L., Turzhitsky, V.M., Backman, V., & Ameer, G.A. (2007). Spectroscopic translation of cell-material interactions. BIOMATERIALS, 28(2), 162-174.Elsevier. doi: 10.1016/j.biomaterials.2006.07.002.

Figueiredo, R.J., Backman, V., Liu, Y., & Paladugula, J. (2007). Architecture and performance of a grid-enabled lookup-based biomedical optimization application: Light scattering spectroscopy. IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE, 11(2), 170-178.Institute of Electrical and Electronics Engineers (IEEE). doi: 10.1109/TITB.2006.876032.

Liu, Y., Brand, R.E., Turzhitsky, V., Kim, Y.L., Roy, H.K., Hasabou, N., Sturgis, C., Shah, D., Hall, C., & Backman, V. (2007). Optical markers in duodenal mucosa predict the presence of pancreatic cancer. CLINICAL CANCER RESEARCH, 13(15), 4392-4399.American Association for Cancer Research (AACR). doi: 10.1158/1078-0432.CCR-06-1648.

Roy, H.K., Wali, R.K., Kim, Y., Liu, Y., Hart, J., Kunte, D.P., Koetsier, J.L., Goldberg, M.J., & Backman, V. (2007). Inducible nitric oxide synthase (iNOS) mediates the early increase of blood supply (EIBS) in colon carcinogenesis. FEBS LETTERS, 581(20), 3857-3862.Wiley. doi: 10.1016/j.febslet.2007.07.012.

Subramanian, H., Pradhan, P., Kim, Y.L., & Backman, V. (2007). Penetration depth of low-coherence enhanced backscattered light in subdiffusion regime. PHYSICAL REVIEW E, 75(4), 041914.American Physical Society (APS). doi: 10.1103/PhysRevE.75.041914.

Gong, J.M., Liu, B., Kim, Y.L., Liu, Y., Li, X., & Backman, V. (2006). Optimal spectral reshaping for resolution improvement in optical coherence tomography. OPTICS EXPRESS, 14(13), 5909-5915.Optica Publishing Group. doi: 10.1364/OE.14.005909.

Kim, Y.L., Pradhan, P., Kim, M.H., & Backman, V. (2006). Circular polarization memory effect in low-coherence enhanced backscattering of light. OPTICS LETTERS, 31(18), 2744-2746.Optica Publishing Group. doi: 10.1364/OL.31.002744.

Kim, Y.L., Pradhan, P., Subramanian, H., Liu, Y., Kim, M.H., & Backman, V. (2006). Origin of low-coherence enhanced backscattering. OPTICS LETTERS, 31(10), 1459-1461.Optica Publishing Group. doi: 10.1364/OL.31.001459.

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Subramanian, H., Brand, R., Deep, P.P.N., Parikh, V., Hasabou, N., Polidoro, D., Sturgis, C., & Backman, V. (2007). Pilot study determining the feasibility of diagnosing pancreatic cancer using single cell partial wave spectroscopy of the duodenal mucosa. In PANCREAS, 35(4), (pp. 429-430).Wolters Kluwer. doi: 10.1097/01.mpa.0000297793.78884.bb.

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Chen, Y., Kim, Y.L., Kromin, A., Liu, Y., Wessels, B., Ulmer, M., & Backman, V. (2003). Determination of nano-sphere sizes using UV light scattering spectroscopy beyond the diffraction limit. In LASERS IN SURGERY AND MEDICINE, (p. 14).

Kim, Y.L., Liu, K., Wali, R.K., Roy, H.K., Goldberg, M.J., Kromine, A.K., Chen, K., & Backman, V. (2003). Detection of the initial stages of colorectal carcinogenesis using polarization light scattering spectroscopy with multivariate statistical analysis. In LASERS IN SURGERY AND MEDICINE, (p. 13).

Liu, Y., Kim, Y.L., Wali, R.K., Roy, H.K., Goldberg, M.J., Kromine, A.K., Chen, K., & Backman, V. (2003). Characterization of increased mucosal blood flow as an early marker of colon carcinogenesis using polarization light scattering spectroscopy. In LASERS IN SURGERY AND MEDICINE, (p. 14).