Hussain, F., Langmead, C.J., Mi, Q., Dutta-Moscato, J., Vodovotz, Y., & Jha, S.K. (2015). Automated parameter estimation for biological models using Bayesian statistical model checking. BMC Bioinformatics, 16 Suppl 17(Suppl 17), S8.Springer Nature. doi: 10.1186/1471-2105-16-S17-S8.
Ziraldo, C., Solovyev, A., Allegretti, A., Krishnan, S., Henzel, M.K., Sowa, G.A., Brienza, D., An, G., Mi, Q., & Vodovotz, Y. (2015). A Computational, Tissue-Realistic Model of Pressure Ulcer Formation in Individuals with Spinal Cord Injury. In Mac Gabhann, F. (Ed.). PLoS Comput Biol, 11(6), e1004309.Public Library of Science (PLoS). doi: 10.1371/journal.pcbi.1004309.
Dutta-Moscato, J., Solovyev, A., Mi, Q., Nishikawa, T., Soto-Gutierrez, A., Fox, I.J., & Vodovotz, Y. (2014). A Multiscale Agent-Based in silico Model of Liver Fibrosis Progression. Front Bioeng Biotechnol, 2(MAY), 18.Frontiers. doi: 10.3389/fbioe.2014.00018.
Wolfram, D., Starzl, R., Hackl, H., Barclay, D., Hautz, T., Zelger, B., Brandacher, G., Lee, W.P.A., Eberhart, N., Vodovotz, Y., Pratschke, J., Pierer, G., & Schneeberger, S. (2014). Insights from computational modeling in inflammation and acute rejection in limb transplantation. In Bueno, V. (Ed.). PLoS One, 9(6), e99926.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0099926.
Azhar, N., Ziraldo, C., Barclay, D., Rudnick, D.A., Squires, R.H., Vodovotz, Y., & Pediatric Acute Liver Failure Study Group. (2013). Analysis of serum inflammatory mediators identifies unique dynamic networks associated with death and spontaneous survival in pediatric acute liver failure. In Androulakis, I.P. (Ed.). PLoS One, 8(11), e78202.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0078202.
Namas, R.A., Bartels, J., Hoffman, R., Barclay, D., Billiar, T.R., Zamora, R., & Vodovotz, Y. (2013). Combined in silico, in vivo, and in vitro studies shed insights into the acute inflammatory response in middle-aged mice. In Unutmaz, D. (Ed.). PLoS One, 8(7), e67419.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0067419.
Solovyev, A., Mi, Q., Tzen, Y.T., Brienza, D., & Vodovotz, Y. (2013). Hybrid equation/agent-based model of ischemia-induced hyperemia and pressure ulcer formation predicts greater propensity to ulcerate in subjects with spinal cord injury. In Peirce, S.M. (Ed.). PLoS Comput Biol, 9(5), e1003070.Public Library of Science (PLoS). doi: 10.1371/journal.pcbi.1003070.
Ziraldo, C., Vodovotz, Y., Namas, R.A., Almahmoud, K., Tapias, V., Mi, Q., Barclay, D., Jefferson, B.S., Chen, G., Billiar, T.R., & Zamora, R. (2013). Central role for MCP-1/CCL2 in injury-induced inflammation revealed by in vitro, in silico, and clinical studies. In Androulakis, I.P. (Ed.). PLoS One, 8(12), e79804.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0079804.
Mi, Q., Constantine, G., Ziraldo, C., Solovyev, A., Torres, A., Namas, R., Bentley, T., Billiar, T.R., Zamora, R., Puyana, J.C., & Vodovotz, Y. (2011). A dynamic view of trauma/hemorrhage-induced inflammation in mice: principal drivers and networks. In El Khoury, J. (Ed.). PLoS One, 6(5), e19424.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0019424.
Ramsgaard, L., Englert, J.M., Manni, M.L., Milutinovic, P.S., Gefter, J., Tobolewski, J., Crum, L., Coudriet, G.M., Piganelli, J., Zamora, R., Vodovotz, Y., Enghild, J.J., & Oury, T.D. (2011). Lack of the receptor for advanced glycation end-products attenuates E. coli pneumonia in mice. In Maus, U.A. (Ed.). PLoS One, 6(5), e20132.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0020132.
Arciero, J.C., Ermentrout, G.B., Upperman, J.S., Vodovotz, Y., & Rubin, J.E. (2010). Using a mathematical model to analyze the role of probiotics and inflammation in necrotizing enterocolitis. In Morty, R.E. (Ed.). PLoS One, 5(4), e10066.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0010066.
Namas, R., Ghuma, A., Torres, A., Polanco, P., Gomez, H., Barclay, D., Gordon, L., Zenker, S., Kim, H.K., Hermus, L., Zamora, R., Rosengart, M.R., Clermont, G., Peitzman, A., Billiar, T.R., Ochoa, J., Pinsky, M.R., Puyana, J.C., & Vodovotz, Y. (2009). An adequately robust early TNF-alpha response is a hallmark of survival following trauma/hemorrhage. In Ojcius, D.M. (Ed.). PLoS One, 4(12), e8406.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0008406.
Wognum, S., Lagoa, C.E., Nagatomi, J., Sacks, M.S., & Vodovotz, Y. (2009). An exploratory pathways analysis of temporal changes induced by spinal cord injury in the rat bladder wall: insights on remodeling and inflammation. In Peccoud, J. (Ed.). PLoS One, 4(6), e5852.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0005852.
Bagci, E.Z., Vodovotz, Y., Billiar, T.R., Ermentrout, B., & Bahar, I. (2008). Computational insights on the competing effects of nitric oxide in regulating apoptosis. In Maedler, K. (Ed.). PLoS One, 3(5), e2249.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0002249.
Li, N.Y.K., Verdolini, K., Clermont, G., Mi, Q., Rubinstein, E.N., Hebda, P.A., & Vodovotz, Y. (2008). A patient-specific in silico model of inflammation and healing tested in acute vocal fold injury. In Csete, M. (Ed.). PLoS One, 3(7), e2789.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0002789.
Vodovotz, Y., Csete, M., Bartels, J., Chang, S., & An, G. (2008). Translational systems biology of inflammation. In McEntyre, J. (Ed.). PLoS Comput Biol, 4(4), e1000014.Public Library of Science (PLoS). doi: 10.1371/journal.pcbi.1000014.