headshot

Michael Becich

Professor
Distinguished University Professor and Chair
Bioengineering Department

overview

Dr. Becich is Professor and Chairman of the Department of Biomedical Informatics at the University of Pittsburgh School of Medicine. He is jointly appointed in Pathology, Information Sciences/Telecommunications and Clinical/Translational Research. He is Associate Director of the University of Pittsburgh Cancer Institute as well as the Clinical and Translational Science Institute at the University of Pittsburgh School of Medicine. Dr. Becich's research interests are focused on the interface between clinical informatics and bioinformatics. His research is funded by the CDC, NCATS, NCI, NHLBI and NLM and includes clinical phenotyping of patients for genomic/personalized medicine, tissue banking informatics, clinical informatics and bioinformatics with a special emphasis on data sharing. For a full research profile see https://digitalvita.pitt.edu/dvprofiles/becich.

about

(2015) Distinguished University Professor.

(2008) Association for Pathology Informatics Lifetime Achievement Award.

(2006) Elected Fellow, American College of Medical Informatics (FACMI).

(2002) Distinguished Visiting Professor, Mount Sinai Hospital, 38th Harold G Pritzker Memorial Lecture, Toronto, Ontario, Canada.

(2001) Visiting Professor of Pathology, Emory University School of Medicine, Atlanta, GA.

(2001) Visiting Professor of Pathology, Montefiore Medical Center, Bronx, NY.

(2001) Visiting Professor of Pathology, Ohio State University, Columbus, OH.

(2001) Visiting Professor of Pathology, Mayo Clinic, Rochester, MN.

(2000) Quest Distinguished Visiting Professor of Pathology, Harvard University, Boston, MA.

(2000) Visiting Professor of Pathology, University of Pennsylvania, Philadelphia, PA.

(2000) Distinguished Visiting Professorship of Pathology, The Leo Kaplan, MD Lectureship, UCLA, Cedar Sinai Medical Center, Los Angeles, CA.

(2000) Distinguished Visiting Professorship of Pathology, 17th Annual Francis P. Boland, MD Memorial Surgical Symposium, University of Scranton, Scranton, PA.

(1999) Intel Internet Health Hero - http://www.intel.com/intel/e-health/heroes.htm and http://www.intel.com/intel/e-health/becich.htm.

(1999) Guest Distinguished Visiting Professorship of Pathology, Johns Hopkins University, Baltimore, MD.

(1999) Visiting Professor of Pathology, MD Anderson Medical Center, Houston, TX.

(1992) Pathology Teaching Award for Anatomic Pathology, University of Pittsburgh.

(1989) Fellow of the College of American Pathologists - FACP.

(1986 - 1989) National Cancer Institute (NCI) Cancer Biology Fellowship Program.

(1983) Medical Student Research Fellowship Award, University of Nebraska.

(1981 - 1983) Graduate Research Assistant Scholarship.

(1980 - 1983) National Student Forum Participant.

(1979 - 1982) Graduate Fellowship, Dept. of Pathology, Northwestern University Medical School.

(1976) Summer Fellow, Dept. of Pathology, Northwestern University Medical School.

BA, Biology, Northwestern University, 1973 - 1977

MD, Medicine and Experimental Pathology, Northwestern University, 1977 - 1984

PhD, Medicine and Experimental Pathology, Northwestern University, 1977 - 1984

Bernstam, E.V., Shireman, P.K., Meric-Bernstam, F., Zozus, M.N., Jiang, X., Brimhall, B.B., Windham, A.K., Schmidt, S., Visweswaran, S., Ye, Y., Goodrum, H., Ling, Y., Berapatre, S., & Becich, M.J. (2021). Artificial intelligence in clinical and translational science: Successes, challenges and opportunities. CTS-CLINICAL AND TRANSLATIONAL SCIENCE.Wiley. doi: 10.1111/cts.13175.

Jackson, B.R., Ye, Y., Crawford, J.M., Becich, M.J., Roy, S., Botkin, J.R., de Baca, M.E., & Pantanowitz, L. (2021). The Ethics of Artificial Intelligence in Pathology and Laboratory Medicine: Principles and Practice. Acad Pathol, 8, 2374289521990784.SAGE Publications. doi: 10.1177/2374289521990784.

Karunakaran, K.B., Yanamala, N., Boyce, G., Becich, M.J., & Ganapathiraju, M.K. (2021). Malignant Pleural Mesothelioma Interactome with 364 Novel Protein-Protein Interactions. CANCERS, 13(7), 1660.MDPI AG. doi: 10.3390/cancers13071660.

Cummings, K.J., Becich, M.J., Blackley, D.J., Deapen, D., Harrison, R., Hassan, R., Henley, S.J., Hesdorffer, M., Horton, D.K., Mazurek, J.M., Pass, H.I., Taioli, E., Wu, X.C., Zauderer, M.G., & Weissman, D.N. (2020). Workshop summary: Potential usefulness and feasibility of a US national mesothelioma registry. AMERICAN JOURNAL OF INDUSTRIAL MEDICINE, 63(2), 105-114.Wiley. doi: 10.1002/ajim.23062.

Tosun, A.B., Pullara, F., Becich, M.J., Taylor, D.L., Chennubhotla, S.C., & Fine, J.L. (2020). HistoMapr™: An Explainable AI (xAI) Platform for Computational Pathology Solutions. In Artificial Intelligence and Machine Learning for Digital Pathology. 12090 LNCS, (pp. 204-227).Springer International Publishing. doi: 10.1007/978-3-030-50402-1_13.

Tosun, A.B., Pullara, F., Becich, M.J., Taylor, D.L., Fine, J.L., & Chennubhotla, S.C. (2020). Explainable AI (xAI) for Anatomic Pathology. ADVANCES IN ANATOMIC PATHOLOGY, 27(4), 241-250.Ovid Technologies (Wolters Kluwer Health). doi: 10.1097/PAP.0000000000000264.

LaFramboise, W.A., Pai, R.K., Petrosko, P., Belsky, M.A., Dhir, A., Howard, P.G., Becich, M.J., Holtzman, M.P., Ahrendt, S.A., Pingpank, J.F., Zeh, H.J., Dhir, R., Bartlett, D.L., & Choudry, H.A. (2019). Discrimination of low- and high-grade appendiceal mucinous neoplasms by targeted sequencing of cancer-related variants. MODERN PATHOLOGY, 32(8), 1197-1209.Springer Science and Business Media LLC. doi: 10.1038/s41379-019-0256-2.

Amin, W., Linkov, F., Landsittel, D.P., Silverstein, J.C., & Becich, M.J. (2018). Factors influencing malignant mesothelioma survival: a retrospective review of the National Mesothelioma Virtual Bank cohort. F1000Research, 7, 1184.F1000 Research Ltd. doi: 10.12688/f1000research.15512.1.

Amin, W., Linkov, F., Landsittel, D.P., Silverstein, J.C., Bashara, W., Gaudioso, C., Feldman, M.D., Pass, H.I., Melamed, J., Friedberg, J.S., & Becich, M.J. (2018). Factors influencing malignant mesothelioma survival: a retrospective review of the National Mesothelioma Virtual Bank cohort. F1000Res, 7, 1184.F1000 Research Ltd. doi: 10.12688/f1000research.15512.3.

Hmeljaki, J., Sanchez-Vega, F., Hoadley, K.A., Shih, J., Stewart, C., Heiman, D., Tarpeyg, P., Danitova, L., Drill, E., Gibb, E.A., Bowlby, R., Kanchil, R., Osmanbeyoglull, H.U., Sekido, Y., Takeshita, J., Newton, Y., Graim, K., Gupta, M., Gaylg, C.M., Diaol, L., Gibbs, D.L., Thorsson, V., Lype, L., Kanthetir, H., Severson, D.T., Ravegnini, G., Desrneules, P., Jungbluth, A.A., Travis, W.D., Dacic, S., Chirieac, L.R., Galateau-Salle, F., Fujimoto, J., Husain, A.N., Silveira, H.C., Rusch, V.W., Rintoul, R.C., Pass, H., Kindler, H., Zauderer, M.G., Kwiatkowski, D.J., Bueno, R., Tsaols, A.S., Creaney, J., Lichtenberg, T., Leraas, K., Bowen, J., Felau, I., Zenklusen, J.C., Akbanil, R., Cherniack, A.D., Byers, L.A., Noble, M.S., Fletcher, J.A., Robertsong, A.G., Shen, R., Aburatani, H., Robinson, B.W., Campbells, P., Ladanyi, M., & Network, T.C.G.A.R. (2018). Integrative Molecular Characterization of Malignant Pleural Mesothelioma. CANCER DISCOVERY, 8(12), 1548-1565.American Association for Cancer Research (AACR). doi: 10.1158/2159-8290.CD-18-0804.

Linkov, F., Silverstein, J.C., Davis, M., Crocker, B., Hao, D., Schneider, A., Schwenk, M., Winters, S., Zelnis, J., Lee, A.V., & Becich, M.J. (2018). Integration of Cancer Registry Data into the Text Information Extraction System: Leveraging the Structured Data Import Tool. J Pathol Inform, 9(1), 47.Medknow. doi: 10.4103/jpi.jpi_38_18.

Luthra, S., Chandran, U., Diergaarde, B., Becich, M., Lee, A.V., & Neumann, C.A. (2018). Expression of reactive species related genes is associated with patient survival in luminal B breast cancer. FREE RADICAL BIOLOGY AND MEDICINE, 120, 170-180.Elsevier BV. doi: 10.1016/j.freeradbiomed.2018.03.011.

Visweswaran, S., Becich, M.J., D'Itri, V.S., Sendro, E.R., MacFadden, D., Anderson, N.R., Allen, K.A., Ranganathan, D., Murphy, S.N., Morrato, E.H., Pincus, H.A., Toto, R., Firestein, G.S., Nadler, L.M., & Reis, S.E. (2018). Accrual to Clinical Trials (ACT): A Clinical and Translational Science Award Consortium Network. JAMIA Open, 1(2), 147-152.Oxford University Press (OUP). doi: 10.1093/jamiaopen/ooy033.

Culbertson, A., Goel, S., Madden, M.B., Safaeinili, N., Jackson, K.L., Carton, T., Waitman, R., Liu, M., Krishnamurthy, A., Hall, L., Cappella, N., Visweswaran, S., Becich, M.J., Applegate, R., Bernstam, E., Rothman, R., Matheny, M., Lipori, G., Bian, J., Hogan, W., Bell, D., Martin, A., Grannis, S., Klann, J., Sutphen, R., O'Hara, A.B., & Kho, A. (2017). The Building Blocks of Inter operability A Multisite Analysis of Patient Demographic Attributes Available for Matching. APPLIED CLINICAL INFORMATICS, 8(2), 322-336.Georg Thieme Verlag KG. doi: 10.4338/ACI-2016-11-RA-0196.

De Rienzo, A., Cook, R.W., Wilkinson, J., Gustafson, C.E., Amin, W., Johnson, C.E., Oelschlager, K.M., MaetzoLd, D.J., Stone, J.F., Feldman, M.D., Becich, M.J., Yeap, B.Y., Richards, W.G., & Bueno, R. (2017). Validation of a Gene Expression Test for Mesothelioma Prognosis in Formalin-Fixed Paraffin-Embedded Tissues. JOURNAL OF MOLECULAR DIAGNOSTICS, 19(1), 65-71.Elsevier BV. doi: 10.1016/j.jmoldx.2016.07.011.

King, A.J., Fisher, A.M., Becich, M.J., & Boone, D.N. (2017). Computer Science, Biology and Biomedical Informatics academy: Outcomes from 5 years of Immersing High-school Students into Informatics Research. J Pathol Inform, 8(1), 2.Medknow. doi: 10.4103/2153-3539.201110.

Amin, W., Chandran, U., Parwani, A.V., & Becich, M.J. (2016). Biomedical Informatics for Anatomic Pathology. In Essentials of Anatomic Pathology. (pp. 509-520).Springer International Publishing. doi: 10.1007/978-3-319-23380-2_9.

Louis, D.N., Feldman, M., Carter, A.B., Dighe, A.S., Pfeifer, J.D., Bry, L., Almeida, J.S., Saltz, J., Braun, J., Tomaszewski, J.E., Gilbertson, J.R., Sinard, J.H., Gerber, G.K., Galli, S.J., Golden, J.A., & Becich, M.J. (2016). Computational Pathology A Path Ahead. ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE, 140(1), 41-50.Archives of Pathology and Laboratory Medicine. doi: 10.5858/arpa.2015-0093-SA.

Uppal, R., Mandava, G., Romagnoli, K.M., King, A.J., Draper, A.J., Handen, A.L., Fisher, A.M., Becich, M.J., & Dutta-Moscato, J. (2016). How can we improve Science, Technology, Engineering, and Math education to encourage careers in Biomedical and Pathology Informatics?. J Pathol Inform, 7(1), 2.Medknow. doi: 10.4103/2153-3539.175375.

Cooper, G.F., Bahar, I., Becich, M.J., Benos, P.V., Berg, J., Espino, J.U., Glymour, C., Jacobson, R.C., Kienholz, M., Lee, A.V., Lu, X., Scheines, R., & Team, C.C.D. (2015). The center for causal discovery of biomedical knowledge from big data. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 22(6), 1132-1136.Oxford University Press (OUP). doi: 10.1093/jamia/ocv059.

Jacobson, R.S., Becich, M.J., Bollag, R.J., Chavan, G., Corrigan, J., Dhir, R., Feldman, M.D., Gaudioso, C., Legowski, E., Maihle, N.J., Mitchell, K., Murphy, M., Sakthivel, M., Tseytlin, E., & Weaver, J. (2015). A Federated Network for Translational Cancer Research Using Clinical Data and Biospecimens. CANCER RESEARCH, 75(24), 5194-5201.American Association for Cancer Research (AACR). doi: 10.1158/0008-5472.CAN-15-1973.

Lynn, H., Yan, X., DeIuliis, J., O'Neal, S., Becich, M., Hochheiser, H., Moller, D.R., Gibson, K.F., Strange, C.B., Sandhaus, R.A., Senior, R., Wyllie, A., Morris, A., Methe, B., Ghedin, E., Leader, J.K., Petro, N., Silfies, L., Zhang, Y., Chen, E.S., Protivnak, D., Martinez, M., Wisniewski, S.R., Kaminski, N., & Investigators, G.R.A.D.S. (2015). Perspectives On A Multi-Center Sarcoidosis Genomics Study. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 191.

Moller, D.R., Koth, L.L., Maier, L.A., Morris, A., Drakes, W., Rossman, M., Leader, J.K., Collman, R.G., Hamzeh, N., Sweiss, N.J., Zhang, Y., O'Neal, S., Senior, R.M., Becich, M., Hochheiser, H.S., Kaminski, N., Wisniewski, S.R., Gibson, K.F., & Grp, G.R.A.D.S.S.S. (2015). Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) Study Sarcoidosis Protocol. ANNALS OF THE AMERICAN THORACIC SOCIETY, 12(10), 1561-1571.American Thoracic Society. doi: 10.1513/AnnalsATS.201503-172OT.

Nasu, M., Emi, M., Pastorino, S., Tanji, M., Powers, A., Luk, H., Baumann, F., Zhang, Y.A., Gazdar, A., Kanodia, S., Tiirikainen, M., Flores, E., Gaudino, G., Becich, M.J., Pass, H.I., Yang, H., & Carbone, M. (2015). High Incidence of Somatic BAP1 Alterations in Sporadic Malignant Mesothelioma. JOURNAL OF THORACIC ONCOLOGY, 10(4), 565-576.Elsevier BV. doi: 10.1097/JTO.0000000000000471.

Strange, C., Senior, R.M., Sciurba, F., O'Neal, S., Morris, A., Wisniewski, S.R., Bowler, R., Hochheiser, H.S., Becich, M.J., Zhang, Y., Leader, J.K., Methe, B.A., Kaminski, N., Sandhaus, R.A., & Grp, G.R.A.D.S.A.S. (2015). Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study Alpha-1 Protocol. ANNALS OF THE AMERICAN THORACIC SOCIETY, 12(10), 1551-1560.American Thoracic Society. doi: 10.1513/AnnalsATS.201503-143OC.

Amin, W., Srinivasan, M., Song, S.Y., Parwani, A.V., & Becich, M.J. (2014). Use of automated image analysis in evaluation of Mesothelioma Tissue Microarray (TMA) from National Mesothelioma Virtual Bank. PATHOLOGY RESEARCH AND PRACTICE, 210(2), 79-82.Elsevier BV. doi: 10.1016/j.prp.2013.09.002.

Amin, W., Tsui, F.R., Borromeo, C., Chuang, C.H., Espino, J.U., Ford, D., Hwang, W., Kapoor, W., Lehmann, H., Martich, G.D., Morton, S., Paranjape, A., Shirey, W., Sorensen, A., Becich, M.J., Hess, R., & Team, P.N. (2014). PaTH: towards a learning health system in the Mid-Atlantic region. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 21(4), 633-636.Oxford University Press (OUP). doi: 10.1136/amiajnl-2014-002759.

Borromeo, C.D., Schleyer, T.K., Becich, M.J., & Hochheiser, H. (2014). Finding Collaborators: Toward Interactive Discovery Tools for Research Network Systems. JOURNAL OF MEDICAL INTERNET RESEARCH, 16(11), e244.JMIR Publications Inc. doi: 10.2196/jmir.3444.

Dutta-Moscato, J., Gopalakrishnan, V., Lotze, M.T., & Becich, M.J. (2014). Creating a pipeline of talent for informatics: STEM initiative for high school students in computer science, biology, and biomedical informatics. J Pathol Inform, 5(1), 12.Medknow. doi: 10.4103/2153-3539.129448.

Amin, W., Parwani, A.V., Melamed, J., Flores, R., Pennathur, A., Valdivieso, F., Whelan, N.B., Landreneau, R., Luketich, J., Feldman, M., Pass, H.I., & Becich, M.J. (2013). National Mesothelioma Virtual Bank: A Platform for Collaborative Research and Mesothelioma Biobanking Resource to Support Translational Research. Lung Cancer Int, 2013, 765748.Hindawi Limited. doi: 10.1155/2013/765748.

LaFramboise, W., Petrosko, P., Lyons, M., Belsky, M., Becich, M., Sciulli, C., Bastacky, M., Meredith, G., Bastacky, S., Parwani, A., & Dhir, R. (2013). Regional Chromosome 9 Targeted Capture and Sequencing Detects Papillary 2 Renal Cell Carcinoma. MODERN PATHOLOGY, 26, 228A.

LaFramboise, W., Petrosko, P., Lyons, M., Belsky, M., Becich, M., Sciulli, C., Bastacky, M., Meredith, G., Bastacky, S., Parwani, A., & Dhir, R. (2013). Regional Chromosome 9 Targeted Capture and Sequencing Detects Papillary 2 Renal Cell Carcinoma. LABORATORY INVESTIGATION, 93, 228A.

Park, S., Parwani, A.V., Aller, R.D., Banach, L., Becich, M.J., Borkenfeld, S., Carter, A.B., Friedman, B.A., Rojo, M.G., Georgiou, A., Kayser, G., Kayser, K., Legg, M., Naugler, C., Sawai, T., Weiner, H., Winsten, D., & Pantanowitz, L. (2013). The history of pathology informatics: A global perspective. J Pathol Inform, 4(1), 7.Medknow. doi: 10.4103/2153-3539.112689.

Risinger, J.I., Allard, J., Chandran, U., Day, R., Chandramouli, G.V.R., Miller, C., Zahn, C., Oliver, J., Litzi, T., Marcus, C., Dubil, E., Byrd, K., Cassablanca, Y., Becich, M., Berchuck, A., Darcy, K.M., Hamilton, C.A., Conrads, T.P., & Maxwell, G.L. (2013). Gene expression analysis of early stage endometrial cancers reveals unique transcripts associated with grade and histology but not depth of invasion. Front Oncol, 3, 139.Frontiers Media SA. doi: 10.3389/fonc.2013.00139.

Gullapalli, R.R., Desai, K.V., Santana-Santos, L., Kant, J.A., & Becich, M.J. (2012). Next generation sequencing in clinical medicine: Challenges and lessons for pathology and biomedical informatics. J Pathol Inform, 3(1), 40.Medknow. doi: 10.4103/2153-3539.103013.

Gullapalli, R.R., Lyons-Weiler, M., Petrosko, P., Dhir, R., Becich, M.J., & LaFramboise, W.A. (2012). Clinical Integration of Next-Generation Sequencing Technology. CLINICS IN LABORATORY MEDICINE, 32(4), 585-+.Elsevier BV. doi: 10.1016/j.cll.2012.07.005.

Lee, R.E., McClintock, D.S., Balis, U.J., Baron, J.M., Becich, M.J., Beckwith, B.A., Brodsky, V.B., Carter, A.B., Dighe, A.S., Haghighi, M., Hipp, J.D., Henricks, W.H., Kim, J.Y., Klepseis, V.E., Kuo, F.C., Lane, W.J., Levy, B.P., Onozato, M.L., Park, S.L., Sinard, J.H., Tuthill, M.J., & Gilbertson, J.R. (2012). Pathology informatics fellowship retreats: The use of interactive scenarios and case studies as pathology informatics teaching tools. J Pathol Inform, 3(1), 41.Medknow. doi: 10.4103/2153-3539.103995.

Park, S.L., Pantanowitz, L., Sharma, G., & Parwani, A.V. (2012). Anatomic Pathology Laboratory Information Systems: A Review. 19, (pp. 81-96).Ovid Technologies (Wolters Kluwer Health). doi: 10.1097/PAP.0b013e318248b787.

Bartholow, T.L., Becich, M.J., Chandran, U.R., & Parwani, A.V. (2011). Immunohistochemical Staining of Slit2 in Primary and Metastatic Prostatic Adenocarcinoma. TRANSLATIONAL ONCOLOGY, 4(5), 314-320.Elsevier BV. doi: 10.1593/tlo.11151.

Bartholow, T.L., Becich, M.J., Chandran, U.R., & Parwani, A.V. (2011). Immunohistochemical analysis of ezrin-radixin-moesin-binding phosphoprotein 50 in prostatic adenocarcinoma. BMC UROLOGY, 11(1), 12.Springer Science and Business Media LLC. doi: 10.1186/1471-2490-11-12.

Bartholow, T.L., Chandran, U.R., Becich, M.J., & Parwani, A.V. (2011). Immunohistochemical profiles of claudin-3 in primary and metastatic prostatic adenocarcinoma. DIAGNOSTIC PATHOLOGY, 6(1), 12.Springer Science and Business Media LLC. doi: 10.1186/1746-1596-6-12.

Bartholow, T.L., Chandran, U.R., Becich, M.J., & Parwani, A.V. (2011). Immunohistochemical staining of radixin and moesin in prostatic adenocarcinoma. BMC Clin Pathol, 11(1), 1.Springer Science and Business Media LLC. doi: 10.1186/1472-6890-11-1.

Jiang, X., Barmada, M.M., Cooper, G.F., & Becich, M.J. (2011). A Bayesian Method for Evaluating and Discovering Disease Loci Associations. In Brusic, V. (Ed.). PLOS ONE, 6(8), e22075.Public Library of Science (PLoS). doi: 10.1371/journal.pone.0022075.

Maxwell, G.L., Hood, B.L., Day, R., Chandran, U., Kirchner, D., Kolli, V.S.K., Bateman, N.W., Allard, J., Miller, C., Sun, M., Flint, M.S., Zahn, C., Oliver, J., Banerjee, S., Litzi, T., Parwani, A., Sandburg, G., Rose, S., Becich, M.J., Berchuck, A., Kohn, E., Risinger, J.I., & Conrads, T.P. (2011). Proteomic analysis of stage I endometrial cancer tissue: Identification of proteins associated with oxidative processes and inflammation. GYNECOLOGIC ONCOLOGY, 121(3), 586-594.Elsevier BV. doi: 10.1016/j.ygyno.2011.02.031.

Tenenbaum, J.D., Whetzel, P.L., Anderson, K., Borromeo, C.D., Dinov, I.D., Gabriel, D., Kirschner, B., Mirel, B., Morris, T., Noy, N., Nyulas, C., Rubenson, D., Saxman, P.R., Singh, H., Whelan, N., Wright, Z., Athey, B.D., Becich, M.J., Ginsburg, G.S., Musen, M.A., Smith, K.A., Tarantal, A.F., Rubin, D.L., & Lyster, P. (2011). The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. JOURNAL OF BIOMEDICAL INFORMATICS, 44(1), 137-145.Elsevier BV. doi: 10.1016/j.jbi.2010.10.003.

Amin, W., Kang, H.P., & Becich, M.J. (2010). Data Management, Databases, and Warehousing. In Biomedical Informatics for Cancer Research. (pp. 39-71).Springer US. doi: 10.1007/978-1-4419-5714-6_3.

Amin, W., Singh, H., Pople, A.K., Winters, S., Dhir, R., Parwani, A.V., & Becich, M.J. (2010). A decade of experience in the development and implementation of tissue banking informatics tools for intra and inter-institutional translational research. J Pathol Inform, 1(1), 12.Medknow. doi: 10.4103/2153-3539.68314.

Bernstam, E.V., Hersh, W.R., Sim, I., Eichmann, D., Silverstein, J.C., Smith, J.W., & Becich, M.J. (2010). Unintended consequences of health information technology: A need for biomedical informatics. JOURNAL OF BIOMEDICAL INFORMATICS, 43(5), 828-830.Elsevier BV. doi: 10.1016/j.jbi.2009.05.009.

Kang, H.P., Borromeo, C.D., Berman, J.J., & Becich, M.J. (2010). The tissue microarray OWL schema: An open-source tool for sharing tissue microarray data. J Pathol Inform, 1(1), 9.Medknow. doi: 10.4103/2153-3539.65347.

LaFramboise, W.A., Petrosko, P., Krill-Burger, J.M., Morris, D.R., McCoy, A.R., Scalise, D., Malehorn, D.E., Guthrie, R.D., Becich, M.J., & Dhir, R. (2010). Proteins secreted by embryonic stem cells activate cardiomyocytes through ligand binding pathways. JOURNAL OF PROTEOMICS, 73(5), 992-1003.Elsevier BV. doi: 10.1016/j.jprot.2009.12.013.

Ochs, M.F., Casagrande, J.T., & Davuluri, R.V. (2010). Biomedical Informatics for Cancer Research. (pp. 1-354).Springer US. doi: 10.1007/978-1-4419-5714-6.

Williams, S., Henricks, W.H., Becich, M.J., Toscano, M., & Carter, A.B. (2010). Telepathology for Patient Care: What Am I Getting Myself Into?. ADVANCES IN ANATOMIC PATHOLOGY, 17(2), 130-149.Ovid Technologies (Wolters Kluwer Health). doi: 10.1097/PAP.0b013e3181cfb788.

Wilson, R.A., Chapman, W.W., Defries, S.J., Becich, M.J., & Chapman, B.E. (2010). Automated ancillary cancer history classification for mesothelioma patients from free-text clinical reports. J Pathol Inform, 1(1), 24.Medknow. doi: 10.4103/2153-3539.71065.

Amin, W., Aktas, I.Z.Y., Duboy, J., Harper, T., Singh, H., Milnes, J.T., Deaton, R., Macias, V., Kajdacsy-Balla, A., Becich, M.J., & Parwani, A.V. (2009). Use of Whole Slide Imaging for Tissue Microarrays: The Cooperative Prostate Cancer Tissue Resource Model. LABORATORY INVESTIGATION, 89, 379A.

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Mohanty, S.K., Piccoli, A.L., Devine, L.J., Patel, A.A., William, G.C., Winters, S.B., Becich, M.J., & Parwani, A.V. (2007). Synoptic tool for reporting of hematological and lymphoid neoplasms based on World Health Organization classification and College of American Pathologists checklist. BMC CANCER, 7(1), 144.Springer Science and Business Media LLC. doi: 10.1186/1471-2407-7-144.

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Varambally, S., Yu, J.J., Laxman, B., Rhodes, D.R., Mehra, R., Tomlins, S.A., Shah, R.B., Chandran, U., Monzon, F.A., Becich, M.J., Wei, J.T., Pienta, K.J., Ghosh, D., Rubin, M.A., & Chinnaiyan, A.M. (2005). Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression. CANCER CELL, 8(5), 393-406.Elsevier BV. doi: 10.1016/j.ccr.2005.10.001.

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Lyons-Weiler, J., Patel, S., Becich, M.J., & Godfrey, T.E. (2004). Tests for finding complex patterns of differential expression in cancers: towards individualized medicine. BMC BIOINFORMATICS, 5(1), 110.Springer Science and Business Media LLC. doi: 10.1186/1471-2105-5-110.

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Eliakim, R., Becich, M.J., Green, K., & Alpers, D.H. (1991). Developmental expression of intestinal surfactant-like particles in rats. American Journal of Physiology - Gastrointestinal and Liver Physiology, 261(2 24-2). doi: 10.1152/ajpgi.1991.261.2.g269.

MORISHIMA, C., BECICH, M., KEATING, J.P., & HATCH, T. (1991). DUBIN-JOHNSON SYNDROME (DJS) IN A MOTHER AND CHILD - ATYPICAL INHERITANCE. In Ped Res 29. PEDIATRIC RESEARCH, 29, (p. A109).

RATNER, L., VANDERHEYDEN, N., GARCIA, J., POLINSKY, M., WESTERVELT, P., & BECICH, M. (1991). FORMATION OF NONINFECTIOUS HIV-1 VIRUS-PARTICLES LACKING A FULL-LENGTH ENVELOPE PROTEIN. AIDS RESEARCH AND HUMAN RETROVIRUSES, 7(3), 287-294.Mary Ann Liebert Inc. doi: 10.1089/aid.1991.7.287.

SHAPIRO, E., BECICH, M.J., PERLMAN, E., & LEPOR, H. (1991). BLADDER WALL ABNORMALITIES IN MYELODYSPLASTIC BLADDERS - A COMPUTER-ASSISTED MORPHOMETRIC ANALYSIS. JOURNAL OF UROLOGY, 145(5), 1024-1029.Ovid Technologies (Wolters Kluwer Health). doi: 10.1016/S0022-5347(17)38521-X.

Smith, E.B. (1991). Laparoscopic cholecystectomy. In Gastroenterology 98. J Natl Med Assoc, 83, (pp. 582-passim).United States.

Soper, N.J., Barteau, J.A., Clayman, R.V., & Becich, M.J. (1991). Safety and efficacy of laparoscopic cholecystectomy using monopolar electrocautery in the porcine model. Surg Laparosc Endosc, 1(1), 17-22.

BECICH, M.J., CARROLL, S., & RATLIFF, T.L. (1990). INTERNALIZATION OF BACILLUS CALMETTE-GUERIN BY BLADDER-TUMOR CELLS. In Lab Invest 62. LABORATORY INVESTIGATION, 62, (p. A8).

Eliakim, R., Becich, M.J., Green, K., & Alpers, D.H. (1990). Both tissue and serum phospholipases release rat intestinal alkaline phosphatase. Am J Physiol, 259(4 Pt 1), G618-G625.American Physiological Society. doi: 10.1152/ajpgi.1990.259.4.G618.

Eliakim, R., Becich, M.J., Green, K., & Alpers, D.H. (1990). Both tissue and serum phospholipases release rat intestinal alkaline phosphatase. American Journal of Physiology - Gastrointestinal and Liver Physiology, 259(4 22-4). doi: 10.1152/ajpgi.1990.259.4.g618.

Andriole, G.L., McClennan, B.L., Becich, M.J., & Picus, D.D. (1989). Effect of low osmolar, ionic and nonionic, contrast media on the cytologic features of exfoliated urothelial cells. Urologic Radiology, 11(1), 133-135.Springer Science and Business Media LLC. doi: 10.1007/bf02926496.

ANDRIOLE, G.L., MCCLENNAN, B.L., BECICH, M.J., & PICUS, D.D. (1989). EFFECT OF LOW OSMOLAR, IONIC AND NONIONIC, CONTRAST-MEDIA ON THE CYTOLOGIC FEATURES OF EXFOLIATED UROTHELIAL CELLS. UROLOGIC RADIOLOGY, 11(3), 133-135. doi: 10.1007/BF02926496.

BAHNSON, R.R., DRESNER, S.M., GOODING, W., & BECICH, M.J. (1989). INCIDENCE AND PROGNOSTIC-SIGNIFICANCE OF LYMPHATIC AND VASCULAR INVASION IN RADICAL PROSTATECTOMY SPECIMENS. PROSTATE, 15(2), 149-155.Wiley. doi: 10.1002/pros.2990150208.

KLAHR, S., SAGEL, S., BECICH, M.J., & SLATOPOLSKY, E. (1989). HYPERCALCEMIA AND RENAL-INSUFFICIENCY IN A 56-YEAR-OLD WOMAN - SARCOIDOSIS - RENAL-CELL CARCINOMA - RENAL-INSUFFICIENCY SECONDARY TO ARTERIOSCLEROSIS. AMERICAN JOURNAL OF MEDICINE, 86(3), 327-334.

BECICH, M.J., LASTARZA, M.W., & BAENZIGER, J.U. (1988). COMPARISON OF RECEPTOR MEDIATED UPTAKE IN A HUMAN HEPATOMA AND RAT-LIVER. In FASEB J. 2. FASEB JOURNAL, 2, (p. A574).

Hammerman, M., Sagel, S., Jaffe, A., & Becich, M.J. (1988). Atrial fibrillation, refractory hypotension and death in a 70 year old woman (Adrenal apoplexy Waterhouse Friderichsen). American Journal Med, (85), 227-234.

ANDRIOLE, G.L., RUDLOFF, M.A., & BECICH, M. (1987). INITIAL EXPERIENCE WITH NEEDLE ASPIRATION CYTOLOGY (NAC) IN THE DIAGNOSIS OF PROSTATIC-CANCER (CAP). JOURNAL OF UROLOGY, 137, (p. A192).Ovid Technologies (Wolters Kluwer Health). doi: 10.1016/S0022-5347(17)75504-8.

BECICH, M.J., & CRUZ, D.J.S. (1986). MALIGNANT ACROSPIROMA - A CLINICOPATHOLOGICAL STUDY OF 11 CASES. In Lab Invest 54. LABORATORY INVESTIGATION, 54, (p. A6).

KELLEY, D.R., HAAFF, E.O., BECICH, M., LAGE, J., BAUER, W.C., DRESNER, S.M., CATALONA, W.J., & RATLIFF, T.L. (1986). PROGNOSTIC VALUE OF PURIFIED PROTEIN DERIVATIVE SKIN-TEST AND GRANULOMA-FORMATION IN PATIENTS TREATED WITH INTRAVESICAL BACILLUS CALMETTE-GUERIN. JOURNAL OF UROLOGY, 135(2), 268-271.Ovid Technologies (Wolters Kluwer Health). doi: 10.1016/S0022-5347(17)45605-9.

Becich, M.J. (1984). Tumor heterogeneity in the transplantable pancreatic carcinoma of rat: Isolation of distinct neoplastic subpopulations to study cytodifferentiation. University Microfilms International, Ann Arbor, MI, (0).

BENDAYAN, M., BECICH, M.J., & REDDY, J.K. (1984). IMMUNOCYTOCHEMICAL LOCALIZATION OF EXOCRINE ENZYMES IN RAT PANCREATIC ACINAR CARCINOMA. EUROPEAN JOURNAL OF CELL BIOLOGY, 34(1), 151-158.

BECICH, M.J., BENDAYAN, M., & REDDY, J.K. (1983). INTRACELLULAR-TRANSPORT AND STORAGE OF SECRETORY PROTEINS IN RELATION TO CYTODIFFERENTIATION IN NEOPLASTIC PANCREATIC ACINAR-CELLS. JOURNAL OF CELL BIOLOGY, 96(4), 949-960.Rockefeller University Press. doi: 10.1083/jcb.96.4.949.

BECICH, M.J., & REDDY, J.K. (1982). SEPARATION AND CHARACTERIZATION OF NEOPLASTIC CELL SUB-POPULATIONS OF A TRANSPLANTABLE RAT PANCREATIC ACINAR CARCINOMA. CANCER RESEARCH, 42(9), 3729-3740.

BECICH, M.J., DAPPERT, B.A., & REDDY, J.K. (1982). SYNTHESIS AND INTRACELLULAR-TRANSPORT OF SECRETORY PROTEINS IN HETEROGENEOUS POPULATIONS OF PANCREATIC ACINAR CARCINOMA-CELLS - ELECTRON-MICROSCOPIC AUTORADIOGRAPHIC STUDY. In J. Cell Bio 95. JOURNAL OF CELL BIOLOGY, 95, (p. A407).

WARREN, J.R., TRUMP, M.J., REDDY, J.K., & BECICH, M.J. (1982). CARBAMYLCHOLINE STIMULATION OF PROTEIN SECRETION IN PANCREATIC ACINAR CARCINOMA OF RAT. CANCER LETTERS, 15(3), 245-253.Elsevier BV. doi: 10.1016/0304-3835(82)90125-2.

WARREN, J.R., BECICH, M.J., & REDDY, J.K. (1980). MACROMOLECULAR-SYNTHESIS AND SECRETION BY FRAGMENTS OF PANCREATIC ACINAR CELL-CARCINOMA. In Fed Proc 39. FEDERATION PROCEEDINGS, 39, (p. 639).

Chu, J.H., Zang, W., Vukmirovic, M., Yan, X., Adams, T., DeIuliis, G., Hu, B., Mihaljinec, A., Schupp, J.C., Becich, M.J., Hochheiser, H., Gibson, K.F., Chen, E.S., Morris, A., Leader, J.K., Wisniewski, S.R., Zhang, Y., Sciurba, F.C., Collman, R.G., Sandhaus, R., Herzog, E.L., Patterson, K.C., Sauler, M., Strange, C., Kaminski, N., & Investigators, G.R.A.D.S. (2021). Gene coexpression networks reveal novel molecular endotypes in alpha-1 antitrypsin deficiency. In THORAX, 76(2), (pp. 134-143).BMJ.England. doi: 10.1136/thoraxjnl-2019-214301.

O'Neal, S., Kaminski, N., Becich, M., Hochheiser, H., Moller, D.R., Gibson, K.F., Strange, C., Sandhaus, R.A., Senior, R., Chen, E.S., Morris, A., Methe, B., Ghedin, E., Leader, J.K., Petro, N., Lynn, H., Zhang, Y., Silfies, L., Protivnak, D., Martinez, M., Wisniewski, S.R., & Investigators, G.R.A.D.S. (2015). Recruitment And Quality Control In Two Simultaneous Protocols. Poster session presented at the meeting of American Thoracic Society International Conference.Denver, CO.

Yan, X., DeIullis, J., Lynn, H., O'Neal, S., Becich, M., Hochheiser, H., Moller, D.R., Gibson, K.F., Strange, C., Sandhaus, R.A., Senior, R., Chen, E.S., Morris, A., Methe, B., Ghedin, E., Leader, J.K., Petro, N., Zhang, Y., Silfies, L., Protivnak, D., Martinez, M., Wisniewski, S.R., Kaminski, N., & Investigators, G.R.A.D.S. (2015). Rnaseq In Sarcoidosis And Alpha-1 Antitrypsin Deficiency Patients. Poster session presented at the meeting of American Thoracic Society International Conference.Denver, CO.

Jiang, X., Barmada, M.M., & Becich, M.J. (2011). Evaluating de novo locus-disease discoveries in GWAS using the signal-to-noise ratio. In AMIA Annu Symp Proc, 2011, (pp. 617-624).United States.

Khalbuss, W.E., Pantanowitz, L., & Parwani, A.V. (2011). Digital imaging in cytopathology. Audio Anatomic Pathology Conference, between the University of Michigan, Ann Arbor, MI and the University of Pittsburgh.United States. doi: 10.4061/2011/264683.

Amin, W., Aktas, I.Z.Y., Duboy, J., Harper, T., Singh, H., Milnes, J.T., Deaton, R., Macias, V., Kajdacsy-Balla, A., Becich, M.J., & Parwani, A.V. (2009). Use of Whole Slide Imaging for Tissue Microarrays: The Cooperative Prostate Cancer Tissue Resource Model. United States Canada Academy of Pathology.Boston, MA.

Amin, W., Mohanty, S.K., Parwani, A.V., Dhir, R., & Becich, M.J. (2008). Tissue banking informatics: Experience from a multi-institutional academic. In LABORATORY INVESTIGATION, 88, (p. 362A).

Handler, S.M., Hanlon, J.T., Perera, S., Saul, M.I., Fridsma, D.B., Visweswaran, S., Studenski, S.A., Roumani, Y.F., Castle, N.G., Nace, D.A., & Becich, M.J. (2008). Assessing the performance characteristics of signals used by a clinical event monitor to detect adverse drug reactions in the nursing home. In AMIA Annu Symp Proc, (pp. 278-282).United States.

Mohanty, S.K., Patel, A.A., Parwani, A.V., & Becich, M.J. (2007). Pathology informatics tools to support translational research. The United States and Canada Academy of Pathology, 2007 Annual Meeting.San Diego, CA.

Fine, J.L., Yagi, Y., Parwani, A.V., Becich, M.J., & Gilbertson, J.R. (2006). Impact of Internet based resources on resident teaching and educational conferences: Experience at a university affiliated hospital network comprising academic and community based pathology practices. The United States and Canada Academy of Pathology, 2006 Annual Meeting.Atlanta, GA.

Patel, A.A., Gupta, D., Seligson, D., Hattab, E.M., Balis, U., Ulbright, T.M., Berman, J.J., Gilbertson, J.R., Becich, M.J., & Parwani, A.V. (2006). Availability and quality of paraffin blocks identified by the shared pathology informatics network (SPIN): A multi-institutional study. The United States and Canada Academy of Pathology Annual Meeting.Atlanta GA.

Cannon, G.M., Pound, C.R., Urda, S.J., Pirtskhalaishvili, G., Becich, M.J., Bastacky, S.I., Dhir, R., Mu, X.C., & Nelson, J.B. (2003). Preservation of the neurovascular bundles (NVB) at radical prostatectomy (RRP) in men with biopsy perineural invasion (PNI). In JOURNAL OF UROLOGY, 169(4), (p. 441).

Pound, C.R., Patel, A.A., Dhir, R., Bastacky, S.I., Mu, X.C., Becich, M.J., & Nelson, J.B. (2002). Preservation of the neurovascular bundles (NVB) at radical prostatectomy (RRP) in men with biopsy perineural invasion (PNI). In JOURNAL OF UROLOGY, 167(4), (p. 337).

Wetzel, A.W., Gilbertson, J., Zheng, L., Gilespie, J., Swalwell, J., Yagi, Y., Kim, S., Emmert-Buck, M., & Becich, M. (2000). Three-dimensional reconstruction for genomic analysis of prostate cancer. In Proceedings of SPIE - The International Society for Optical Engineering, 3905, (pp. 204-212).

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Research interests

bioinformatics
diagnostic imaging
gene expression regulation,...
genomics
imaging informatics
informatics
next generation sequencing
pathology
sequence analysis, dna
translational research